Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs12188845 | chr5:92794795 | T/C | 1.42E-5 | 406 | 15.05 | 16.83 | 18.57 | KM Plot |
| LGG | rs12192956 | chr6:151887809 | G/A | 6.12E-14 | 402 | 15.63 | 14.3 | 1.3 | KM Plot |
| LGG | rs12193018 | chr6:151888110 | C/G | 6.12E-14 | 402 | 15.63 | 14.3 | 1.3 | KM Plot |
| LGG | rs12198281 | chr6:151890559 | C/T | 6.12E-14 | 402 | 15.63 | 14.3 | 1.3 | KM Plot |
| LGG | rs12198710 | chr6:151891143 | G/T | 6.12E-14 | 402 | 15.63 | 14.3 | 1.3 | KM Plot |
| LGG | rs12203877 | chr6:151893195 | C/T | 5.86E-14 | 402 | 15.68 | 13.87 | 1.3 | KM Plot |
| LGG | rs12203880 | chr6:151893212 | C/T | 5.86E-14 | 402 | 15.68 | 13.87 | 1.3 | KM Plot |
| LGG | rs12204083 | chr6:151893605 | C/T | 5.73E-14 | 402 | 15.63 | 14.3 | 1.3 | KM Plot |
| LGG | rs12205762 | chr6:151891022 | T/C | 6.84E-14 | 401 | 15.63 | 13.87 | 1.3 | KM Plot |
| LGG | rs12205837 | chr6:151894340 | C/T | 5.73E-14 | 402 | 15.63 | 14.3 | 1.3 | KM Plot |
| LGG | rs12212478 | chr6:151878541 | C/T | 0.000188 | 405 | 15.73 | 13.38 | 2.53 | KM Plot |
| LGG | rs12213456 | chr6:151891247 | A/G | 6.84E-14 | 401 | 15.63 | 13.87 | 1.3 | KM Plot |
| LGG | rs12221016 | chr10:33428554 | C/T | 1.36E-9 | 403 | 14.5 | 18.47 | 7.72 | KM Plot |
| LGG | rs12221030 | chr10:33428515 | G/A | 1.36E-9 | 403 | 14.5 | 18.47 | 7.72 | KM Plot |
| LGG | rs12227685 | chr12:102232010 | G/A | 1.44E-7 | 404 | 14.37 | 19.17 | 21.25 | KM Plot |